User guide

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Download the user guide and examples.

• 1. Introduction: What is pybids?
  • 1.1. What is BIDS and why should you use it?
  • 1.2. What is pybids and why should you use it?
  • 1.3. Installing pybids
  • 1.4. Finding help
• 2. layout: Querying BIDS datasets
  • 2.1. Loading BIDS datasets
  • 2.2. Querying datasets
  • 2.3. Extracting metadata
• 3. analysis: Model specification for BIDS datasets
  • 3.1. An overview of the analysis module
  • 3.2. Quickstart
• 4. reports: Data acquisition report generation
  • 4.1. Initializing reports
  • 4.2. Generating reports
    • 4.2.1. Generating reports on subsets of the data